Transcript: ENST00000547685.1 MMP19-007

Description

matrix metallopeptidase 19 [Source:HGNC Symbol;Acc:7165]

Gene Synonyms

MMP18, RASI, RASI-1

Location

Chromosome 12: 56,230,210-56,233,818 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 1861 variant alleles and maps to 473 oligo probes.

Gene

This transcript is a product of gene ENSG00000123342.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000394182.1	MMP19-201	2245	222aa	ENSP00000377736.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q99542	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000322569.4	MMP19-001	2229	508aa	ENSP00000313437.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8895	Q99542	NM_002429.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000548629.1	MMP19-011	1813	485aa	ENSP00000446979.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W1C3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409200.3	MMP19-005	1431	305aa	ENSP00000386625.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS61146	B4E030	NM_001272101.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000548882.1	MMP19-003	3840	81aa	ENSP00000447363.1	Nonsense mediated decay		A6ND33	-	-
ENST00000552872.1	MMP19-006	2350	63aa	ENSP00000446776.1	Nonsense mediated decay		Q99542	-	-
ENST00000552763.1	MMP19-004	946	108aa	ENSP00000449752.1	Nonsense mediated decay		B4DNP3	-	-
ENST00000547487.1	MMP19-010	568	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000547299.1	MMP19-009	174	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000547685.1	MMP19-007	2016	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 2,016 bps,

Version

ENST00000547685.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000408022 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000547685.1 MMP19-007

Summary