Transcript: ENST00000548221.1 NCKAP1L-003

Description

NCK-associated protein 1-like [Source:HGNC Symbol;Acc:4862]

Gene Synonyms

HEM1

Location

Chromosome 12: 54,891,542-54,936,557 forward strand.

About this transcript

This transcript has 31 exons, is annotated with 3 domains and features, is associated with 19430 variant alleles and maps to 818 oligo probes.

Gene

This transcript is a product of gene ENSG00000123338.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000293373.6	NCKAP1L-001	4720	1127aa	ENSP00000293373.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31813	B2RA26 P55160 Q5XG97 Q9BV52	NM_005337.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545638.2	NCKAP1L-002	3612	1077aa	ENSP00000445596.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53799	B2RA26 P55160 Q5XG97 Q9BV52	NM_001184976.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000548221.1	NCKAP1L-003	3559	449aa	ENSP00000447246.1	Nonsense mediated decay		F8W050	-	-
ENST00000552211.1	NCKAP1L-007	597	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000548916.1	NCKAP1L-008	708	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000547500.1	NCKAP1L-005	636	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000549451.1	NCKAP1L-004	629	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000548980.1	NCKAP1L-006	562	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 31, Coding exons: 14, Transcript length: 3,559 bps, Translation length: 449 residues

Version

ENST00000548221.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000406196 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000548221.1 NCKAP1L-003

Summary