Transcript: ENST00000378747.3 OPTN-008

Description

optineurin [Source:HGNC Symbol;Acc:17142]

Gene Synonyms

ALS12, FIP2, GLC1E, HIP7, HYPL, NRP, TFIIIA-INTP

Location

Chromosome 10: 13,142,225-13,180,291 forward strand.

About this transcript

This transcript has 15 exons, is annotated with 15 domains and features, is associated with 18999 variant alleles and maps to 642 oligo probes.

Gene

This transcript is a product of gene ENSG00000123240.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000378748.3	OPTN-005	3521	577aa	ENSP00000368022.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7094	Q96CV9	NM_001008213.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378752.3	OPTN-004	3488	571aa	ENSP00000368027.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96CV9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378747.3	OPTN-008	3400	577aa	ENSP00000368021.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7094	Q96CV9	NM_001008212.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378757.2	OPTN-007	3304	577aa	ENSP00000368032.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7094	Q96CV9	NM_021980.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378764.2	OPTN-009	2498	571aa	ENSP00000368040.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96CV9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000263036.5	OPTN-006	2464	577aa	ENSP00000263036.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7094	Q96CV9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000430081.1	OPTN-011	848	147aa	ENSP00000414747.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000424614.1	OPTN-001	664	126aa	ENSP00000400356.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000482140.1	OPTN-002	667	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000469025.1	OPTN-003	642	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487935.1	OPTN-010	511	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486862.1	OPTN-012	423	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 13, Transcript length: 3,400 bps, Translation length: 577 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96CV9

CCDS

This transcript is a member of the Human CCDS set: CCDS7094

Version

ENST00000378747.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000046837 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000378747.3 OPTN-008

Summary