Transcript: ENST00000531440.1 RNF170-007

Description

ring finger protein 170 [Source:HGNC Symbol;Acc:25358]

Gene Synonyms

DKFZP564A022, SNAX1

Location

Chromosome 8: 42,720,609-42,751,741 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 9 domains and features, is associated with 13033 variant alleles and maps to 172 oligo probes.

Gene

This transcript is a product of gene ENSG00000120925.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000534961.1	RNF170-202	4116	258aa	ENSP00000445725.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6138	E9PNG8 E9PP55 Q96K19	NM_001160223.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527424.1	RNF170-001	3880	258aa	ENSP00000434797.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6138	E9PNG8 E9PP55 Q96K19	NM_030954.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000319073.4	RNF170-201	3812	162aa	ENSP00000325969.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96K19	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000319104.3	RNF170-005	1866	200aa	ENSP00000326138.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55230	E9PNG8 E9PP55 Q96K19	NM_001160224.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000526349.1	RNF170-003	1338	174aa	ENSP00000435782.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55229	Q96K19	NM_001160225.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000531440.1	RNF170-007	580	115aa	ENSP00000436416.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PNG8 E9PP55	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000524954.1	RNF170-006	195	45aa	ENSP00000437146.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PNG8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000240159.4	RNF170-004	2023	116aa	ENSP00000240159.4	Nonsense mediated decay		E9PNG8 Q96K19	-	-
ENST00000528318.1	RNF170-002	1169	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 580 bps, Translation length: 115 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000531440.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000383170 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000531440.1 RNF170-007

Summary