Transcript: ENST00000372692.4 SET-001

Description

SET nuclear oncogene [Source:HGNC Symbol;Acc:10760]

Gene Synonyms

2PP2A, I2PP2A, IGAAD, IPP2A2, PHAPII, SETP18, TAF-I, TAF-IBETA

Location

Chromosome 9: 131,445,934-131,458,679 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 7 domains and features, is associated with 7859 variant alleles and maps to 787 oligo probes.

Gene

This transcript is a product of gene ENSG00000119335.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000322030.8	SET-002	2915	277aa	ENSP00000318012.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6907	Q01105	NM_003011.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000372692.4	SET-001	2850	290aa	ENSP00000361777.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48037	B2REB7 Q01105 Q5VXV3	NM_001287737.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000372688.4	SET-201	1279	266aa	ENSP00000361773.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59150	Q01105	NM_001248001.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000372686.5	SET-010	1029	265aa	ENSP00000361771.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q01105	-	-
ENST00000409104.3	SET-003	962	268aa	ENSP00000387321.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59149	Q01105	NM_001248000.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000454747.1	SET-009	235	32aa	ENSP00000410806.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B2REB7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000477806.1	SET-008	957	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466009.1	SET-005	597	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000480217.1	SET-004	509	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485056.1	SET-011	483	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000480536.1	SET-012	388	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 2,850 bps, Translation length: 290 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q01105

CCDS

This transcript is a member of the Human CCDS set: CCDS48037

Version

ENST00000372692.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000054476 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000372692.4 SET-001

Summary