Transcript: ENST00000260926.5 SATB2-003

Description

SATB homeobox 2 [Source:HGNC Symbol;Acc:21637]

Gene Synonyms

FLJ21474, KIAA1034

Location

Chromosome 2: 200,134,231-200,329,831 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 21 domains and features, is associated with 80689 variant alleles and maps to 529 oligo probes.

Gene

This transcript is a product of gene ENSG00000119042.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000443023.1	SATB2-012	6194	674aa	ENSP00000388764.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JR56	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000417098.1	SATB2-001	5730	733aa	ENSP00000401112.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2327	Q59FT3 Q9UPW6	NM_001172509.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000260926.5	SATB2-003	5318	733aa	ENSP00000260926.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2327	Q59FT3 Q9UPW6	NM_001172517.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457245.1	SATB2-002	2656	733aa	ENSP00000405420.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2327	Q59FT3 Q9UPW6	NM_015265.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428695.1	SATB2-013	2135	615aa	ENSP00000388581.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q3ZB87	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440919.1	SATB2-005	2166	126aa	ENSP00000415610.1	Nonsense mediated decay		F8WCV6	-	-
ENST00000484124.1	SATB2-008	579	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000463386.1	SATB2-004	372	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483346.2	SATB2-009	2647	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000473517.1	SATB2-011	592	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 10, Transcript length: 5,318 bps, Translation length: 733 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UPW6

CCDS

This transcript is a member of the Human CCDS set: CCDS2327

Version

ENST00000260926.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000335415 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000260926.5 SATB2-003

Summary