Transcript: ENST00000237289.4 TNFAIP3-001

Description

tumor necrosis factor, alpha-induced protein 3 [Source:HGNC Symbol;Acc:11896]

Gene Synonyms

A20, OTUD7C, TNFA1P2

Location

About this transcript

This transcript has 9 exons, is annotated with 25 domains and features, is associated with 8344 variant alleles and maps to 583 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000237289.4	TNFAIP3-001	4432	790aa	ENSP00000237289.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5187	D3TTY6 D3TTZ0 D3TTZ5 P21580 Q5PY18 Q5VXQ8 Q5VXQ9 Q5VXR0	NM_006290.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000420009.1	TNFAIP3-003	698	162aa	ENSP00000401562.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5VXQ8 Q5VXQ9 Q5VXR0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000433680.1	TNFAIP3-004	465	98aa	ENSP00000409845.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5VXQ9 Q5VXR0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000421450.1	TNFAIP3-002	421	25aa	ENSP00000393577.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5VXR0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000485192.1	TNFAIP3-005	604	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 4,432 bps, Translation length: 790 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P21580

CCDS

This transcript is a member of the Human CCDS set: CCDS5187

Version

ENST00000237289.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000042414 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.