Transcript: ENST00000318130.8 EDEM3-001

Description

ER degradation enhancer, mannosidase alpha-like 3 [Source:HGNC Symbol;Acc:16787]

Gene Synonyms

C1orf22

Location

About this transcript

This transcript has 20 exons, is annotated with 20 domains and features, is associated with 25941 variant alleles and maps to 894 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000318130.8	EDEM3-001	6898	932aa	ENSP00000318147.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1363	H0Y498 Q7L2Y5 Q9BZQ6	NM_025191.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367512.3	EDEM3-201	3008	905aa	ENSP00000356482.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZLZ2 Q7L2Y5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000439962.1	EDEM3-005	2872	380aa	ENSP00000390536.1	Nonsense mediated decay		H0Y498 Q7L2Y5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000466392.1	EDEM3-002	491	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474725.1	EDEM3-004	1911	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000466606.1	EDEM3-006	487	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 6,898 bps, Translation length: 932 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BZQ6

CCDS

This transcript is a member of the Human CCDS set: CCDS1363

Version

ENST00000318130.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000085785 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.