Transcript: ENST00000423674.1 HPCAL1-004

Description

hippocalcin-like 1 [Source:HGNC Symbol;Acc:5145]

Gene Synonyms

BDR1, HLP2, VILIP-3

Location

Chromosome 2: 10,443,015-10,559,973 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 4 domains and features, is associated with 50831 variant alleles and maps to 122 oligo probes.

Gene

This transcript is a product of gene ENSG00000115756.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000381765.3	HPCAL1-002	1904	193aa	ENSP00000371184.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1671	C9JW46 O75544 P37235 Q6FGY1	NM_134421.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000307845.3	HPCAL1-001	1751	193aa	ENSP00000310749.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1671	C9JW46 O75544 P37235 Q6FGY1	NM_002149.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000422133.1	HPCAL1-005	587	103aa	ENSP00000388856.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000423674.1	HPCAL1-004	586	30aa	ENSP00000413689.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JW46	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000419810.2	HPCAL1-003	4781	175aa	ENSP00000416359.2	Nonsense mediated decay		C9JW46 E9PC71	-	-

Summary

Statistics

Exons: 4, Coding exons: 1, Transcript length: 586 bps, Translation length: 30 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000423674.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000323535 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000423674.1 HPCAL1-004

Summary