Transcript: ENST00000392701.3 GALNT3-001

Description

UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3) [Source:HGNC Symbol;Acc:4125]

Gene Synonyms

GalNAc-T3, HFTC, HHS

Location

Chromosome 2: 166,604,101-166,651,192 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 11 domains and features, is associated with 19375 variant alleles and maps to 755 oligo probes.

Gene

This transcript is a product of gene ENSG00000115339.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000392701.3	GALNT3-001	3868	633aa	ENSP00000376465.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2226	C9J2C3 C9J388 C9JW45 C9JXX2 Q14435	NM_004482.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409882.1	GALNT3-010	2107	371aa	ENSP00000386955.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EUL0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000412248.1	GALNT3-004	1954	464aa	ENSP00000412643.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J2C3 C9J388 C9JW45 C9JXX2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000447156.1	GALNT3-006	570	11aa	ENSP00000399880.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000414977.1	GALNT3-002	559	57aa	ENSP00000413477.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JW45 C9JXX2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000431484.1	GALNT3-005	540	90aa	ENSP00000397112.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J388 C9JW45 C9JXX2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000422973.1	GALNT3-003	536	25aa	ENSP00000413694.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JW45	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000437849.1	GALNT3-007	799	89aa	ENSP00000391104.1	Nonsense mediated decay		H7BZS4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000463254.1	GALNT3-008	603	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 3,868 bps, Translation length: 633 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q14435

CCDS

This transcript is a member of the Human CCDS set: CCDS2226

Version

ENST00000392701.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000255205 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000392701.3 GALNT3-001

Summary