Transcript: ENST00000454817.1 COL7A1-201

Description

collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:2214]

Gene Synonyms

EBD1, EBDCT, EBR1

Location

Chromosome 3: 48,601,506-48,632,593 reverse strand.

About this transcript

This transcript has 117 exons, is annotated with 108 domains and features, is associated with 18572 variant alleles and maps to 2057 oligo probes.

Gene

This transcript is a product of gene ENSG00000114270.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000328333.8	COL7A1-001	9276	2944aa	ENSP00000332371.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2773	Q02388	NM_000094.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000454817.1	COL7A1-201	9073	2912aa	ENSP00000412569.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q02388	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000422991.1	COL7A1-003	597	173aa	ENSP00000391608.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBL3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000470076.1	COL7A1-007	651	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487017.1	COL7A1-002	5807	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000459756.1	COL7A1-005	818	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000466591.1	COL7A1-009	778	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474432.1	COL7A1-006	728	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467985.1	COL7A1-004	709	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465238.1	COL7A1-008	587	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000462475.1	COL7A1-010	305	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 117, Coding exons: 117, Transcript length: 9,073 bps, Translation length: 2,912 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q02388

Version

ENST00000454817.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000454817.1 COL7A1-201

Summary