Transcript: ENST00000476082.2 HGD-010

Description

homogentisate 1,2-dioxygenase [Source:HGNC Symbol;Acc:4892]

Gene Synonyms

AKU, HGO

Location

Chromosome 3: 120,365,820-120,400,960 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 3 domains and features, is associated with 14582 variant alleles and maps to 232 oligo probes.

Gene

This transcript is a product of gene ENSG00000113924.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000283871.5	HGD-001	2005	445aa	ENSP00000283871.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3000	B3KW64 Q93099	NM_000187.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000494453.1	HGD-006	683	145aa	ENSP00000419163.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000475447.2	HGD-005	565	88aa	ENSP00000417977.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000476082.2	HGD-010	462	142aa	ENSP00000419560.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JTX9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000492108.1	HGD-009	631	98aa	ENSP00000419838.1	Nonsense mediated decay		H7C5G7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000488183.1	HGD-003	572	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485313.1	HGD-007	528	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000480862.1	HGD-002	656	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470321.1	HGD-004	528	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000466528.1	HGD-008	444	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 462 bps, Translation length: 142 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000476082.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000355419 (version 3)

Favourite species

All species

Recent locations

Transcript: ENST00000476082.2 HGD-010

Summary