Transcript: ENST00000514469.1 HMGXB3-004

Description

HMG box domain containing 3 [Source:HGNC Symbol;Acc:28982]

Gene Synonyms

HMGX3, KIAA0194, SMF

Location

About this transcript

This transcript has 7 exons, is annotated with 2 domains and features, is associated with 8522 variant alleles and maps to 150 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000503427.1	HMGXB3-002	5275	1260aa	ENSP00000422231.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PEK0 Q6P442	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000502717.1	HMGXB3-001	4974	1292aa	ENSP00000421917.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54935	Q12766 Q6P442	NM_014983.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000514469.1	HMGXB3-004	975	112aa	ENSP00000426631.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000513318.1	HMGXB3-003	749	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000510472.1	HMGXB3-005	580	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 4, Transcript length: 975 bps, Translation length: 112 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000514469.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000373772 (version 1)