Transcript: ENST00000517779.1 ITK-007

Description

IL2-inducible T-cell kinase [Source:HGNC Symbol;Acc:6171]

Gene Synonyms

EMT, LPFS1, LYK, PSCTK2

Location

Chromosome 5: 156,607,878-156,641,221 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 14843 variant alleles and maps to 107 oligo probes.

Gene

This transcript is a product of gene ENSG00000113263.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000422843.3	ITK-001	4528	620aa	ENSP00000398655.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4336	E5RFR5 Q08881 Q7Z318	NM_005546.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000521769.1	ITK-008	571	73aa	ENSP00000430327.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RFR5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000517779.1	ITK-007	587	116aa	ENSP00000431054.1	Nonsense mediated decay		E5RJY4	-	-
ENST00000519749.1	ITK-005	3375	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000522616.1	ITK-003	1102	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000519402.1	ITK-002	5869	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000523926.1	ITK-011	996	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000520173.1	ITK-010	831	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000520555.1	ITK-006	606	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000519759.1	ITK-009	540	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 587 bps, Translation length: 116 residues

Version

ENST00000517779.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000373690 (version 1)

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Transcript: ENST00000517779.1 ITK-007

Summary