Transcript: ENST00000522348.1 SPARC-004

Description

secreted protein, acidic, cysteine-rich (osteonectin) [Source:HGNC Symbol;Acc:11219]

Gene Synonyms

Location

Chromosome 5: 151,052,739-151,066,524 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 4 domains and features, is associated with 5916 variant alleles and maps to 166 oligo probes.

Gene

This transcript is a product of gene ENSG00000113140.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000231061.4	SPARC-001	3701	303aa	ENSP00000231061.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4318	D3DQH8 E5RJA5 E5RK62 F5GY03 F5H4E2 P09486	NM_003118.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000521569.1	SPARC-005	602	115aa	ENSP00000428119.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RK62	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000538026.1	SPARC-008	576	149aa	ENSP00000440127.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RK62 F5GY03	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000539687.1	SPARC-007	511	111aa	ENSP00000444998.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RJA5 F5H4E2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000522348.1	SPARC-004	497	53aa	ENSP00000429152.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RJA5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000537849.1	SPARC-009	218	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000520687.1	SPARC-002	1598	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000521327.1	SPARC-003	864	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000524277.1	SPARC-006	505	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 497 bps, Translation length: 53 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000522348.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000373828 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000522348.1 SPARC-004

Summary