Transcript: ENST00000382496.5 SEMA5A-001

Description

sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A [Source:HGNC Symbol;Acc:10736]

Gene Synonyms

SEMAF, semF

Location

Chromosome 5: 9,035,138-9,546,187 reverse strand.

About this transcript

This transcript has 23 exons, is annotated with 50 domains and features, is associated with 228297 variant alleles and maps to 1001 oligo probes.

Gene

This transcript is a product of gene ENSG00000112902.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000382496.5	SEMA5A-001	11762	1074aa	ENSP00000371936.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3875	B4DE33 D6RAF4 Q13591	NM_003966.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513968.1	SEMA5A-002	935	254aa	ENSP00000421961.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RAF4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000514923.1	SEMA5A-003	605	202aa	ENSP00000424171.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000509486.1	SEMA5A-004	538	91aa	ENSP00000423574.1	Nonsense mediated decay		D6R9K6	-	-

Summary

Statistics

Exons: 23, Coding exons: 21, Transcript length: 11,762 bps, Translation length: 1,074 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13591

CCDS

This transcript is a member of the Human CCDS set: CCDS3875

Version

ENST00000382496.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000206989 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000382496.5 SEMA5A-001

Summary