Transcript: ENST00000463634.2 PRPF4B-002

Description

pre-mRNA processing factor 4B [Source:HGNC Symbol;Acc:17346]

Gene Synonyms

KIAA0536, PR4H, PRP4, PRP4H, PRP4K, Prp4, dJ1013A10.1

Location

Chromosome 6: 4,041,083-4,065,217 forward strand.

About this transcript

This transcript has 17 exons, is associated with 10237 variant alleles and maps to 678 oligo probes.

Gene

This transcript is a product of gene ENSG00000112739.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000337659.6	PRPF4B-011	4415	1007aa	ENSP00000337194.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4488	F5H2U2 H0YDJ3 Q13523	NM_003913.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538861.1	PRPF4B-201	3216	993aa	ENSP00000439331.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H2U2 H0YDJ3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000480058.1	PRPF4B-001	6775	1007aa	ENSP00000433547.1	Nonsense mediated decay	CCDS4488	F5H2U2 H0YDJ3 Q13523	-	-
ENST00000481109.1	PRPF4B-003	2364	587aa	ENSP00000433714.1	Nonsense mediated decay		H0YDJ3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000494674.1	PRPF4B-010	1727	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466185.1	PRPF4B-007	1297	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461612.1	PRPF4B-009	629	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490653.1	PRPF4B-008	581	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490399.1	PRPF4B-006	576	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000463634.2	PRPF4B-002	2590	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 0, Transcript length: 2,590 bps,

Version

ENST00000463634.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000039705 (version 5)

Favourite species

All species

Recent locations

Transcript: ENST00000463634.2 PRPF4B-002

Summary