Transcript: ENST00000317357.5 SOBP-001

Description

sine oculis binding protein homolog (Drosophila) [Source:HGNC Symbol;Acc:29256]

Gene Synonyms

FLJ10159, JXC1, MRAMS

Location

About this transcript

This transcript has 7 exons, is annotated with 11 domains and features, is associated with 67818 variant alleles and maps to 615 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000317357.5	SOBP-001	5231	873aa	ENSP00000318900.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43488	A7XYQ1	NM_018013.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000494935.1	SOBP-003	572	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000477448.1	SOBP-002	1535	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 5,231 bps, Translation length: 873 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A7XYQ1

CCDS

This transcript is a member of the Human CCDS set: CCDS43488

Version

ENST00000317357.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000041693 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.