Transcript: ENST00000316170.3 GCNT2-001

Description

glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group) [Source:HGNC Symbol;Acc:4204]

Gene Synonyms

CCAT, CTRCT13, GCNT2C, GCNT5, IGNT, II, NACGT1, NAGCT1, ULG3, bA360O19.2, bA421M1.1

Location

Chromosome 6: 10,556,240-10,629,601 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 5 domains and features, is associated with 37242 variant alleles and maps to 470 oligo probes.

Gene

This transcript is a product of gene ENSG00000111846.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000379597.3	GCNT2-003	4525	402aa	ENSP00000368917.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34338	Q08M29 Q8N0V5 Q8N7N7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000316170.3	GCNT2-001	4381	400aa	ENSP00000314844.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4512	Q06430	NM_001491.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000265012.4	GCNT2-004	4214	402aa	ENSP00000265012.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4513	Q8NFS9	NM_145655.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000495262.1	GCNT2-006	2214	402aa	ENSP00000419411.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34338	Q08M29 Q8N0V5 Q8N7N7	NM_145649.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000410107.1	GCNT2-010	1255	116aa	ENSP00000386321.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZBL3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000397423.2	GCNT2-002	3528	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489225.1	GCNT2-009	932	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000459872.1	GCNT2-016	779	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485764.1	GCNT2-017	608	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474518.1	GCNT2-014	580	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000498320.1	GCNT2-011	547	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475577.1	GCNT2-012	547	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488742.1	GCNT2-015	545	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489819.1	GCNT2-013	409	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474983.1	GCNT2-007	1933	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000483204.1	GCNT2-008	1615	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000461400.1	GCNT2-005	320	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 4,381 bps, Translation length: 400 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q06430

CCDS

This transcript is a member of the Human CCDS set: CCDS4512

Version

ENST00000316170.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000039834 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000316170.3 GCNT2-001

Summary