Transcript: ENST00000548356.1 C12orf49-003

Description

chromosome 12 open reading frame 49 [Source:HGNC Symbol;Acc:26128]

Gene Synonyms

FLJ21415

Location

Chromosome 12: 117,155,141-117,157,932 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 2 domains and features, is associated with 1116 variant alleles and maps to 198 oligo probes.

Gene

This transcript is a product of gene ENSG00000111412.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261318.3	C12orf49-001	2801	205aa	ENSP00000261318.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9179	F8VVN2 Q9H741	NM_024738.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000548356.1	C12orf49-003	923	46aa	ENSP00000449151.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VVN2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536380.1	C12orf49-201	911	175aa	ENSP00000442947.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H6Y2 F8VVN2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000547606.1	C12orf49-004	492	43aa	ENSP00000447722.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000547630.1	C12orf49-002	1371	47aa	ENSP00000446478.1	Nonsense mediated decay		F8VPB4	-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 923 bps, Translation length: 46 residues

Version

ENST00000548356.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000403849 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000548356.1 C12orf49-003

Summary