Transcript: ENST00000552864.1 LIN7A-001

Description

lin-7 homolog A (C. elegans) [Source:HGNC Symbol;Acc:17787]

Gene Synonyms

LIN-7A, LIN7, MALS-1, MALS1, TIP-33, VELI1

Location

About this transcript

This transcript has 6 exons, is annotated with 15 domains and features, is associated with 63395 variant alleles and maps to 596 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000552864.1	LIN7A-001	6112	233aa	ENSP00000447488.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9021	O14910	NM_004664.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000549417.1	LIN7A-003	905	180aa	ENSP00000448975.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YIA8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000552093.1	LIN7A-004	546	130aa	ENSP00000448891.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000261203.3	LIN7A-002	989	101aa	ENSP00000261203.3	Nonsense mediated decay		J3KN23	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 6,112 bps, Translation length: 233 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O14910

CCDS

This transcript is a member of the Human CCDS set: CCDS9021

Version

ENST00000552864.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000407760 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.