Transcript: ENST00000347936.2 SLC22A18-002

Description

solute carrier family 22, member 18 [Source:HGNC Symbol;Acc:10964]

Gene Synonyms

BWR1A, BWSCR1A, HET, IMPT1, ITM, ORCTL2, SLC22A1L, TSSC5, p45-BWR1A

Location

Chromosome 11: 2,920,951-2,946,476 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 23 domains and features, is associated with 13163 variant alleles and maps to 471 oligo probes.

Gene

This transcript is a product of gene ENSG00000110628.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000380574.1	SLC22A18-003	1755	424aa	ENSP00000369948.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7740	E9PMN7 Q69YM4 Q96BI1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000312221.5	SLC22A18-001	1628	424aa	ENSP00000311139.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7740	E9PMN7 Q69YM4 Q96BI1	NM_002555.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000347936.2	SLC22A18-002	1542	424aa	ENSP00000307859.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7740	E9PMN7 Q69YM4 Q96BI1	NM_183233.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449793.2	SLC22A18-005	1225	326aa	ENSP00000392072.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PRM7 Q69YM4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000485423.1	SLC22A18-012	635	134aa	ENSP00000433019.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PMN7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000441077.1	SLC22A18-004	831	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000498209.2	SLC22A18-009	782	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000492567.2	SLC22A18-006	684	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000449603.1	SLC22A18-008	682	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467719.1	SLC22A18-013	2635	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000463571.1	SLC22A18-007	1030	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000495518.1	SLC22A18-010	588	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000498244.1	SLC22A18-011	325	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 1,542 bps, Translation length: 424 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96BI1

CCDS

This transcript is a member of the Human CCDS set: CCDS7740

Version

ENST00000347936.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000027768 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000347936.2 SLC22A18-002

Summary