Transcript: ENST00000576708.1 NUP88-010

Description

nucleoporin 88kDa [Source:HGNC Symbol;Acc:8067]

Gene Synonyms

MGC8530

Location

Chromosome 17: 5,265,109-5,292,170 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 4 domains and features, is associated with 14011 variant alleles and maps to 278 oligo probes.

Gene

This transcript is a product of gene ENSG00000108559.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000573584.1	NUP88-001	2916	741aa	ENSP00000458954.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11070	I3L245 Q99567	NM_002532.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000225696.4	NUP88-004	2194	696aa	ENSP00000225696.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DP20 I3L245	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000572809.1	NUP88-006	771	153aa	ENSP00000459370.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L245	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000576708.1	NUP88-010	800	110aa	ENSP00000461334.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000572290.1	NUP88-005	615	128aa	ENSP00000459979.1	Nonsense mediated decay		I3L2W3	-	-
ENST00000573169.1	NUP88-014	1195	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000572019.1	NUP88-009	580	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000574867.1	NUP88-002	2081	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000576862.1	NUP88-013	788	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000575976.1	NUP88-008	599	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000574087.1	NUP88-011	548	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000574855.1	NUP88-012	434	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000570937.1	NUP88-007	361	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 5, Transcript length: 800 bps, Translation length: 110 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000576708.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000439356 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000576708.1 NUP88-010

Summary