Transcript: ENST00000225603.4 CBX1-001

Description

chromobox homolog 1 [Source:HGNC Symbol;Acc:1551]

Gene Synonyms

CBX, HP1-BETA, HP1Hs-beta, HP1Hsbeta, M31, MOD1, p25beta

Location

Chromosome 17: 46,147,414-46,178,883 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 19 domains and features, is associated with 15442 variant alleles and maps to 369 oligo probes.

Gene

This transcript is a product of gene ENSG00000108468.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000393408.3	CBX1-002	2422	185aa	ENSP00000377060.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11525	C9JWS9 J3KS05 K7ELA4 P83916 Q6IBN6	NM_006807.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000225603.4	CBX1-001	2232	185aa	ENSP00000225603.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11525	C9JWS9 J3KS05 K7ELA4 P83916 Q6IBN6	NM_001127228.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000581003.1	CBX1-006	812	173aa	ENSP00000462242.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JWS9 J3KS05 K7ELA4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000402583.1	CBX1-004	578	168aa	ENSP00000385413.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B5MD17	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000495350.1	CBX1-005	550	138aa	ENSP00000465985.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JWS9 K7ELA4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000444685.1	CBX1-003	544	110aa	ENSP00000393179.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JWS9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 2,232 bps, Translation length: 185 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P83916

CCDS

This transcript is a member of the Human CCDS set: CCDS11525

Version

ENST00000225603.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000318015 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000225603.4 CBX1-001

Summary