Transcript: ENST00000316157.3 LARP4B-002

Description

La ribonucleoprotein domain family, member 4B [Source:HGNC Symbol;Acc:28987]

Gene Synonyms

KIAA0217, LARP5

Location

Chromosome 10: 855,484-931,702 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 12 domains and features, is associated with 33390 variant alleles and maps to 871 oligo probes.

Gene

This transcript is a product of gene ENSG00000107929.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000316157.3	LARP4B-002	5640	738aa	ENSP00000326128.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31131	B5MCU2 Q92615	NM_015155.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000448368.1	LARP4B-007	1438	339aa	ENSP00000394545.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000406525.2	LARP4B-003	681	131aa	ENSP00000385229.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B5MCU2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000440895.2	LARP4B-008	656	190aa	ENSP00000403018.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000412411.1	LARP4B-004	432	57aa	ENSP00000390556.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000476529.1	LARP4B-005	613	79aa	ENSP00000476786.1	Nonsense mediated decay		-	-	-
ENST00000469487.1	LARP4B-001	859	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481118.1	LARP4B-006	421	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000609318.1	LARP4B-010	4848	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000608970.1	LARP4B-009	656	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 5,640 bps, Translation length: 738 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q92615

CCDS

This transcript is a member of the Human CCDS set: CCDS31131

Version

ENST00000316157.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000046395 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000316157.3 LARP4B-002

Summary