Transcript: ENST00000442677.2 CDH23-006

Description

cadherin-related 23 [Source:HGNC Symbol;Acc:13733]

Gene Synonyms

CDHR23, DFNB12, KIAA1774, KIAA1812, USH1D

Location

Chromosome 10: 73,405,673-73,476,635 forward strand.

About this transcript

This transcript has 17 exons, is annotated with 46 domains and features, is associated with 33494 variant alleles and maps to 483 oligo probes.

Gene

This transcript is a product of gene ENSG00000107736.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000224721.6	CDH23-001	10085	3359aa	ENSP00000224721.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	NM_022124.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000442677.2	CDH23-006	5971	803aa	ENSP00000388894.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000466757.3	CDH23-004	4475	954aa	ENSP00000473539.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000398788.3	CDH23-201	4329	1114aa	ENSP00000381768.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53540	Q9H251	NM_001171934.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000299366.7	CDH23-003	3954	1106aa	ENSP00000299366.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3XCN8 Q8N5B3	NM_001171931.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000398809.4	CDH23-202	2684	530aa	ENSP00000381789.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44429	Q9H251	NM_052836.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000461841.3	CDH23-002	2000	575aa	ENSP00000473454.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		R4GN22	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000398842.3	CDH23-203	1983	530aa	ENSP00000381822.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G8JLI8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000475158.1	CDH23-008	4114	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000398792.3	CDH23-007	1649	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470494.1	CDH23-005	704	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 5,971 bps, Translation length: 803 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000442677.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000051232 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000442677.2 CDH23-006

Summary