Transcript: ENST00000371748.5 LHX3-001

Description

LIM homeobox 3 [Source:HGNC Symbol;Acc:6595]

Gene Synonyms

CPHD3, LIM3, M2-LHX3

Location

About this transcript

This transcript has 6 exons, is annotated with 21 domains and features, is associated with 5312 variant alleles and maps to 336 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000371746.3	LHX3-002	2403	402aa	ENSP00000360811.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6995	F1T0D8 F1T0D9 Q9UBR4	NM_014564.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371748.5	LHX3-001	2365	397aa	ENSP00000360813.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6994	F1T0D5 Q9UBR4	NM_178138.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 2,365 bps, Translation length: 397 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UBR4

CCDS

This transcript is a member of the Human CCDS set: CCDS6994

Version

ENST00000371748.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000055048 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.