Transcript: ENST00000393386.2 PTPRZ1-001

Description

protein tyrosine phosphatase, receptor-type, Z polypeptide 1 [Source:HGNC Symbol;Acc:9685]

Gene Synonyms

HPTPZ, HPTPzeta, HTPZP2, PTP-ZETA, PTP18, PTPRZ, PTPRZ2, PTPZ, R-PTP-zeta-2, RPTPB, RPTPbeta, phosphacan

Location

Chromosome 7: 121,513,143-121,702,090 forward strand.

About this transcript

This transcript has 30 exons, is annotated with 42 domains and features, is associated with 79361 variant alleles and maps to 1032 oligo probes.

Gene

This transcript is a product of gene ENSG00000106278.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000393386.2	PTPRZ1-001	8175	2315aa	ENSP00000377047.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34740	P23471	NM_002851.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449182.1	PTPRZ1-002	4627	1448aa	ENSP00000410000.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56505	C9JFM0	NM_001206839.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000483028.1	PTPRZ1-004	593	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471837.1	PTPRZ1-003	568	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474500.1	PTPRZ1-010	1128	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000483995.1	PTPRZ1-006	817	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000489114.1	PTPRZ1-009	571	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000468641.1	PTPRZ1-007	554	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470504.1	PTPRZ1-008	549	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 30, Coding exons: 30, Transcript length: 8,175 bps, Translation length: 2,315 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P23471

CCDS

This transcript is a member of the Human CCDS set: CCDS34740

Version

ENST00000393386.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000347288 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000393386.2 PTPRZ1-001

Summary