Transcript: ENST00000599644.1 SIPA1L3-004

Description

signal-induced proliferation-associated 1 like 3 [Source:HGNC Symbol;Acc:23801]

Gene Synonyms

KIAA0545, SPAL3

Location

Chromosome 19: 38,397,885-38,398,614 forward strand.

About this transcript

This transcript has 2 exons, is associated with 340 variant alleles and maps to 33 oligo probes.

Gene

This transcript is a product of gene ENSG00000105738.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000222345.6	SIPA1L3-001	7987	1781aa	ENSP00000222345.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33007	O60292 Q8IUV1	NM_015073.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000601054.1	SIPA1L3-012	572	190aa	ENSP00000472734.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R2Q7	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000600919.1	SIPA1L3-010	407	136aa	ENSP00000471706.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000595982.1	SIPA1L3-005	163	55aa	ENSP00000472844.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000595384.1	SIPA1L3-006	785	165aa	ENSP00000468981.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000476317.2	SIPA1L3-002	608	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000599644.1	SIPA1L3-004	545	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000596403.1	SIPA1L3-013	811	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000595495.1	SIPA1L3-011	584	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000601881.1	SIPA1L3-009	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000601222.1	SIPA1L3-007	546	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000594553.1	SIPA1L3-008	374	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 545 bps,

Version

ENST00000599644.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000461003 (version 1)

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Transcript: ENST00000599644.1 SIPA1L3-004

Summary