Transcript: ENST00000595652.1 SCN1B-002

Description

sodium channel, voltage-gated, type I, beta subunit [Source:HGNC Symbol;Acc:10586]

Gene Synonyms

ATFB13, BRGDA5, GEFSP1

Location

About this transcript

This transcript has 6 exons, is annotated with 7 domains and features, is associated with 4460 variant alleles and maps to 192 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262631.5	SCN1B-001	1451	218aa	ENSP00000262631.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12441	Q07699 Q8WU42	NM_001037.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000415950.3	SCN1B-003	979	268aa	ENSP00000396915.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46047	Q07699	NM_199037.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000595652.1	SCN1B-002	814	147aa	ENSP00000468848.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DI92	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000596348.1	SCN1B-005	560	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000602150.1	SCN1B-004	3460	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 814 bps, Translation length: 147 residues

Version

ENST00000595652.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000461568 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.