Transcript: ENST00000391759.1 TFPT-003

Description

TCF3 (E2A) fusion partner (in childhood Leukemia) [Source:HGNC Symbol;Acc:13630]

Gene Synonyms

FB1, INO80F, amida

Location

About this transcript

This transcript has 6 exons, is annotated with 3 domains and features, is associated with 4929 variant alleles and maps to 347 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000391759.1	TFPT-003	1205	253aa	ENSP00000375639.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12878	G5E9B5 P0C1Z6	NM_013342.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000391758.1	TFPT-002	804	244aa	ENSP00000375638.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G5E9B5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000391757.1	TFPT-005	774	193aa	ENSP00000375637.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8MTQ3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000420715.2	TFPT-006	737	105aa	ENSP00000395180.1	Nonsense mediated decay		F8WDC1	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,205 bps, Translation length: 253 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P0C1Z6

CCDS

This transcript is a member of the Human CCDS set: CCDS12878

Version

ENST00000391759.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000141215 (version 4)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.