Transcript: ENST00000546079.1 CLPTM1-002

Description

cleft lip and palate associated transmembrane protein 1 [Source:HGNC Symbol;Acc:2087]

Location

Chromosome 19: 45,457,848-45,496,448 forward strand.

About this transcript

This transcript has 14 exons, is annotated with 11 domains and features, is associated with 18822 variant alleles and maps to 769 oligo probes.

Gene

This transcript is a product of gene ENSG00000104853.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000541297.2	CLPTM1-004	2732	655aa	ENSP00000442011.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DDS3 F5H8J3 K7EKQ7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000337392.5	CLPTM1-001	2604	669aa	ENSP00000336994.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12651	B4DDS3 K7EKQ7 O96005	NM_001294.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546079.1	CLPTM1-002	2342	567aa	ENSP00000443192.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DDS3 K7EKQ7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000586915.1	CLPTM1-010	775	209aa	ENSP00000468310.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ERL5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000585961.1	CLPTM1-005	572	18aa	ENSP00000465731.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EKQ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000591304.1	CLPTM1-006	528	171aa	ENSP00000467927.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EQQ1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000589347.1	CLPTM1-011	638	152aa	ENSP00000464985.1	Nonsense mediated decay		K7EJ16	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000589158.1	CLPTM1-007	749	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000588855.1	CLPTM1-003	1522	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000588274.1	CLPTM1-008	805	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000587537.1	CLPTM1-012	737	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000586975.1	CLPTM1-009	720	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 12, Transcript length: 2,342 bps, Translation length: 567 residues

Version

ENST00000546079.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000453265 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000546079.1 CLPTM1-002

Summary