Transcript: ENST00000220913.5 CHRAC1-001

Description

chromatin accessibility complex 1 [Source:HGNC Symbol;Acc:13544]

Gene Synonyms

CHARC1, CHARC15, CHRAC-1, CHRAC-15, CHRAC15, YCL1

Location

About this transcript

This transcript has 3 exons, is annotated with 6 domains and features, is associated with 3261 variant alleles and maps to 357 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000220913.5	CHRAC1-001	2488	131aa	ENSP00000220913.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6379	Q9NRG0	NM_017444.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000519533.1	CHRAC1-002	1678	56aa	ENSP00000428697.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RGS9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000518971.1	CHRAC1-003	925	80aa	ENSP00000430484.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YBX4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000519618.1	CHRAC1-004	811	97aa	ENSP00000430003.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000523569.1	CHRAC1-005	618	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 2,488 bps, Translation length: 131 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NRG0

CCDS

This transcript is a member of the Human CCDS set: CCDS6379

Version

ENST00000220913.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000377816 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.