Transcript: ENST00000558817.1 HOMER2-007

Description

homer homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:17513]

Gene Synonyms

ACPD, CPD, Cupidin, HOMER-2, HOMER-2A, HOMER-2B, VESL-2, Vesl-2

Location

Chromosome 15: 83,519,948-83,533,011 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 6 domains and features, is associated with 6651 variant alleles and maps to 122 oligo probes.

Gene

This transcript is a product of gene ENSG00000103942.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000304231.8	HOMER2-004	1990	354aa	ENSP00000305632.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45334	Q9NSB8	NM_199330.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558090.1	HOMER2-005	6201	4aa	ENSP00000452870.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000450735.2	HOMER2-001	1950	343aa	ENSP00000407634.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45336	Q9NSB8	NM_004839.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000426485.1	HOMER2-202	1815	299aa	ENSP00000394293.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PAZ1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000399166.2	HOMER2-201	1782	288aa	ENSP00000382119.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W826	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558817.1	HOMER2-007	555	185aa	ENSP00000454125.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YNR9	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000500334.1	HOMER2-009	1261	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000561345.1	HOMER2-006	659	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000560374.1	HOMER2-008	459	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000558552.1	HOMER2-010	948	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 555 bps, Translation length: 185 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000558817.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000418690 (version 1)

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Transcript: ENST00000558817.1 HOMER2-007

Summary