Transcript: ENST00000562787.1 CENPT-001

Description

centromere protein T [Source:HGNC Symbol;Acc:25787]

Gene Synonyms

C16orf56, CENP-T, FLJ13111, ICEN22

Location

Chromosome 16: 67,862,060-67,881,361 reverse strand.

About this transcript

This transcript has 16 exons, is annotated with 12 domains and features, is associated with 10527 variant alleles and maps to 544 oligo probes.

Gene

This transcript is a product of gene ENSG00000102901.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000562787.1	CENPT-001	2345	561aa	ENSP00000457810.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42182	H3BMP6 H3BQ71 Q96BT3	NM_025082.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440851.2	CENPT-202	2202	561aa	ENSP00000400140.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42182	H3BMP6 H3BQ71 Q96BT3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000219172.3	CENPT-201	1829	561aa	ENSP00000219172.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42182	H3BMP6 H3BQ71 Q96BT3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000564817.1	CENPT-008	1638	506aa	ENSP00000457294.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BMP6 H3BQ71 H3BTR4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000445712.2	CENPT-203	952	148aa	ENSP00000411594.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DMP9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000566758.1	CENPT-027	858	277aa	ENSP00000457832.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BMP6 H3BQ71 H3BUW2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000561593.1	CENPT-011	673	64aa	ENSP00000454481.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BMP6 H3BQ71	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000565114.1	CENPT-010	633	48aa	ENSP00000455638.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BQ71	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000567985.1	CENPT-019	575	6aa	ENSP00000460542.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000562513.2	CENPT-033	1669	163aa	ENSP00000461212.1	Nonsense mediated decay		H3BMP6 H3BQ71 I3L4F8	-	-
ENST00000562462.1	CENPT-007	1005	73aa	ENSP00000455918.1	Nonsense mediated decay		H3BMP6 H3BQ71 H3BQS6	-	-
ENST00000565713.1	CENPT-025	822	101aa	ENSP00000457304.1	Nonsense mediated decay		H3BMP6 H3BQ71 H3BTS2	-	-
ENST00000566067.1	CENPT-030	631	79aa	ENSP00000454627.1	Nonsense mediated decay		H3BMP6 H3BN05 H3BQ71	-	-
ENST00000562338.1	CENPT-028	583	114aa	ENSP00000455801.1	Nonsense mediated decay		H3BMP6 H3BQ71 H3BQJ0	-	-
ENST00000568069.1	CENPT-023	507	73aa	ENSP00000456714.1	Nonsense mediated decay		H3BMP6 H3BQ71 H3BQS6	-	-
ENST00000562947.1	CENPT-026	797	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000564144.1	CENPT-016	599	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000567482.1	CENPT-017	586	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000565385.1	CENPT-018	573	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000564346.1	CENPT-020	571	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000568652.1	CENPT-012	568	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000569094.1	CENPT-013	561	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000565436.1	CENPT-021	557	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000568765.1	CENPT-032	544	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000569019.1	CENPT-015	535	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000564538.1	CENPT-029	501	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000565132.1	CENPT-014	437	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000569862.1	CENPT-002	2957	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000564128.1	CENPT-003	2673	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000565157.1	CENPT-006	2133	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000436104.2	CENPT-005	1990	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000563885.1	CENPT-009	1931	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000568495.1	CENPT-031	1098	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000574569.1	CENPT-004	897	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000562483.1	CENPT-024	652	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000568564.1	CENPT-022	537	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 13, Transcript length: 2,345 bps, Translation length: 561 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96BT3

CCDS

This transcript is a member of the Human CCDS set: CCDS42182

Version

ENST00000562787.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000422020 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000562787.1 CENPT-001

Summary