Transcript: ENST00000542526.1 NUP93-004

Description

nucleoporin 93kDa [Source:HGNC Symbol;Acc:28958]

Gene Synonyms

KIAA0095, NIC96

Location

Chromosome 16: 56,817,368-56,878,797 forward strand.

About this transcript

This transcript has 20 exons, is annotated with 3 domains and features, is associated with 27375 variant alleles and maps to 535 oligo probes.

Gene

This transcript is a product of gene ENSG00000102900.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000564887.1	NUP93-003	2875	696aa	ENSP00000458039.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55996	H3BMX0 H3BNG7 H3BP95 Q8N1F7	NM_001242795.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542526.1	NUP93-004	2856	696aa	ENSP00000440235.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55996	H3BMX0 H3BNG7 H3BP95 Q8N1F7	NM_001242796.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000569842.1	NUP93-002	2834	880aa	ENSP00000458101.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BM93 H3BMX0 H3BNG7 H3BP95 H3BRI8 H3BV11 H3BVG0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000308159.5	NUP93-001	2741	819aa	ENSP00000310668.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10769	H3BM93 H3BMX0 H3BNG7 H3BP95 H3BRI8 H3BV11 Q8N1F7	NM_014669.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000563858.1	NUP93-023	797	229aa	ENSP00000455230.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPA9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000563486.1	NUP93-007	635	140aa	ENSP00000456196.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000569863.1	NUP93-022	630	125aa	ENSP00000454587.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BMX0 H3BNG7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000567641.1	NUP93-018	604	156aa	ENSP00000455210.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BMX0 H3BNG7 H3BP95	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000568656.1	NUP93-019	592	178aa	ENSP00000454285.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BM93 H3BNG7 H3BRI8 H3BV11	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000566315.1	NUP93-020	589	151aa	ENSP00000456264.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BRI8 H3BV11	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000568283.1	NUP93-017	584	40aa	ENSP00000454844.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BNG7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000562496.1	NUP93-021	583	136aa	ENSP00000457902.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BV11	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000563405.1	NUP93-008	477	117aa	ENSP00000458078.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BVE2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000566678.1	NUP93-013	442	132aa	ENSP00000454935.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BNG7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000569322.1	NUP93-011	410	84aa	ENSP00000457907.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BV15	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000567081.1	NUP93-016	315	16aa	ENSP00000455181.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000569595.1	NUP93-014	590	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000566727.1	NUP93-015	563	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000563437.1	NUP93-012	762	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000564278.1	NUP93-009	588	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000563465.1	NUP93-010	458	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 20, Coding exons: 18, Transcript length: 2,856 bps, Translation length: 696 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8N1F7

CCDS

This transcript is a member of the Human CCDS set: CCDS55996

Version

ENST00000542526.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000432381 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000542526.1 NUP93-004

Summary