Transcript: ENST00000262158.2 SMAD7-001

Description

SMAD family member 7 [Source:HGNC Symbol;Acc:6773]

Gene Synonyms

CRCS3, MADH7, MADH8

Location

Chromosome 18: 46,446,223-46,477,081 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 19 domains and features, is associated with 15228 variant alleles and maps to 378 oligo probes.

Gene

This transcript is a product of gene ENSG00000101665.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262158.2	SMAD7-001	3087	426aa	ENSP00000262158.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11936	K7EKF0 O15105	NM_005904.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000589634.1	SMAD7-005	1278	425aa	ENSP00000467621.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59317	O15105	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000591805.1	SMAD7-002	1152	211aa	ENSP00000466902.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54186	K7EKF0 O15105	NM_001190822.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000586093.1	SMAD7-007	574	158aa	ENSP00000465590.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EKF0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000585986.1	SMAD7-006	563	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000587336.1	SMAD7-004	549	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000588190.1	SMAD7-008	401	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000545051.2	SMAD7-003	2211	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 3,087 bps, Translation length: 426 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O15105

CCDS

This transcript is a member of the Human CCDS set: CCDS11936

Version

ENST00000262158.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000255906 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000262158.2 SMAD7-001

Summary