Transcript: ENST00000585042.1 VAPA-005

Description

VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa [Source:HGNC Symbol;Acc:12648]

Gene Synonyms

VAP-33, VAP-A, VAP33, hVAP-33

Location

Chromosome 18: 9,914,060-9,936,154 forward strand.

About this transcript

This transcript has 4 exons, is associated with 10775 variant alleles and maps to 95 oligo probes.

Gene

This transcript is a product of gene ENSG00000101558.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000400000.2	VAPA-001	6815	249aa	ENSP00000382880.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11848	A8KA83 Q9P0L0	NM_194434.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000340541.4	VAPA-002	1227	294aa	ENSP00000345656.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11847	Q9P0L0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000585042.1	VAPA-005	567	29aa	ENSP00000463155.1	Nonsense mediated decay		J3QKM9	-	-
ENST00000584796.1	VAPA-008	654	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000578314.1	VAPA-009	532	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000577539.1	VAPA-007	3760	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000583475.1	VAPA-004	939	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000577901.1	VAPA-003	917	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000583879.1	VAPA-006	719	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 567 bps, Translation length: 29 residues

Version

ENST00000585042.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000442550 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000585042.1 VAPA-005

Summary