Transcript: ENST00000373433.4 RPRD1B-001

Description

regulation of nuclear pre-mRNA domain containing 1B [Source:HGNC Symbol;Acc:16209]

Gene Synonyms

C20orf77, CREPT, DKFZp434P0735, FLJ44520, NET60, dJ1057B20.2

Location

About this transcript

This transcript has 7 exons, is annotated with 8 domains and features, is associated with 25567 variant alleles and maps to 437 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000373433.4	RPRD1B-001	3874	326aa	ENSP00000362532.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13301	Q9NQG5	NM_021215.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449186.2	RPRD1B-004	591	197aa	ENSP00000416420.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2A2M0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000462548.2	RPRD1B-003	2436	60aa	ENSP00000436816.1	Nonsense mediated decay		E9PQF3	-	-
ENST00000495457.1	RPRD1B-002	542	113aa	ENSP00000433947.1	Nonsense mediated decay		E9PIQ9	-	-
ENST00000471511.1	RPRD1B-005	571	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000484683.1	RPRD1B-006	554	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 3,874 bps, Translation length: 326 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NQG5

CCDS

This transcript is a member of the Human CCDS set: CCDS13301

Version

ENST00000373433.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000079142 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.