Transcript: ENST00000216658.5 PAPLN-004

Description

papilin, proteoglycan-like sulfated glycoprotein [Source:HGNC Symbol;Acc:19262]

Gene Synonyms

MGC50452

Location

Chromosome 14: 73,704,288-73,740,073 forward strand.

About this transcript

This transcript has 27 exons, is annotated with 34 domains and features, is associated with 19183 variant alleles and maps to 753 oligo probes.

Gene

This transcript is a product of gene ENSG00000100767.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000427855.1	PAPLN-202	5912	1278aa	ENSP00000403403.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KXI1 O95428	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000340738.5	PAPLN-001	5834	1251aa	ENSP00000345395.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32114	B3KXI1 O95428	NM_173462.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381166.3	PAPLN-201	5508	1109aa	ENSP00000370558.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O95428	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555445.1	PAPLN-003	4282	1262aa	ENSP00000451729.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KXI1 O95428	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000554301.1	PAPLN-002	4090	1278aa	ENSP00000451803.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KXI1 O95428	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000559759.1	PAPLN-014	2994	311aa	ENSP00000453664.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000216658.5	PAPLN-004	4182	808aa	ENSP00000216658.5	Nonsense mediated decay		B5MDP7	-	-
ENST00000555123.1	PAPLN-007	4108	929aa	ENSP00000452455.1	Nonsense mediated decay		G3V5P6	-	-
ENST00000557061.1	PAPLN-009	3709	214aa	ENSP00000451053.1	Nonsense mediated decay		H0YJA1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000554314.1	PAPLN-012	707	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000555700.1	PAPLN-008	4668	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000554527.1	PAPLN-013	784	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000555035.1	PAPLN-011	451	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 27, Coding exons: 19, Transcript length: 4,182 bps, Translation length: 808 residues

Version

ENST00000216658.5

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000413181 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000216658.5 PAPLN-004

Summary