Transcript: ENST00000493585.1 ISM2-003

Description

isthmin 2 [Source:HGNC Symbol;Acc:23176]

Gene Synonyms

FLJ32147, TAIL1, THSD3

Location

Chromosome 14: 77,941,592-77,965,159 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 9 domains and features, is associated with 11298 variant alleles and maps to 340 oligo probes.

Gene

This transcript is a product of gene ENSG00000100593.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000393684.3	ISM2-201	3042	483aa	ENSP00000377289.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3XAI3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000342219.4	ISM2-001	2971	571aa	ENSP00000341490.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9864	G3XAI3 Q6H9L7	NM_199296.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000412904.1	ISM2-202	2745	490aa	ENSP00000416773.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V2Q2 Q6H9L7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000429906.1	ISM2-203	2745	490aa	ENSP00000395387.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6H9L7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000493585.1	ISM2-003	1739	292aa	ENSP00000420452.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45143	Q6H9L7	NM_182509.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000554801.2	ISM2-008	579	185aa	ENSP00000450791.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V2Q2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000216481.6	ISM2-002	3042	76aa	ENSP00000216481.6	Nonsense mediated decay		Q6H9L7	-	-
ENST00000480979.1	ISM2-004	944	104aa	ENSP00000419434.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000471734.1	ISM2-006	913	73aa	ENSP00000417679.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000472744.1	ISM2-005	1137	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487738.1	ISM2-007	1076	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,739 bps, Translation length: 292 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6H9L7

CCDS

This transcript is a member of the Human CCDS set: CCDS45143

Version

ENST00000493585.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000351311 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000493585.1 ISM2-003

Summary