Transcript: ENST00000460581.2 COCH-007

Description

cochlin [Source:HGNC Symbol;Acc:2180]

Gene Synonyms

COCH-5B2, COCH5B2, DFNA31, DFNA9

Location

Chromosome 14: 31,343,970-31,359,822 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 15 domains and features, is associated with 7601 variant alleles and maps to 519 oligo probes.

Gene

This transcript is a product of gene ENSG00000100473.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000460581.2	COCH-007	2688	438aa	ENSP00000451713.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V4C4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396618.3	COCH-005	2536	550aa	ENSP00000379862.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9640	G3V4C4 G3V5G6 O43405	NM_004086.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000216361.4	COCH-006	2397	550aa	ENSP00000216361.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9640	G3V4C4 G3V5G6 O43405	NM_001135058.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000382493.4	COCH-201	2131	401aa	ENSP00000371933.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EN67	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000468826.2	COCH-008	2129	434aa	ENSP00000452284.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EN67	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000475087.1	COCH-003	1997	494aa	ENSP00000451528.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V5G6 Q96IU6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555881.1	COCH-011	782	202aa	ENSP00000452569.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V5X3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000556908.1	COCH-012	775	193aa	ENSP00000452541.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V5V4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000557065.1	COCH-014	654	55aa	ENSP00000451629.1	Nonsense mediated decay		H0YJJ0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000553772.1	COCH-010	554	80aa	ENSP00000452343.1	Nonsense mediated decay		G3V5G6	-	-
ENST00000553833.1	COCH-013	635	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000555117.1	COCH-009	619	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 8, Transcript length: 2,688 bps, Translation length: 438 residues

Version

ENST00000460581.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000409705 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000460581.2 COCH-007

Summary