Transcript: ENST00000248929.9 SGSM3-001

Description

small G protein signaling modulator 3 [Source:HGNC Symbol;Acc:25228]

Gene Synonyms

DJ1042K10.2, MAP, RABGAP5, RABGAPLP, RUSC3, RUTBC3, RabGAP-5

Location

Chromosome 22: 40,766,615-40,806,293 forward strand.

About this transcript

This transcript has 22 exons, is annotated with 20 domains and features, is associated with 18799 variant alleles and maps to 841 oligo probes.

Gene

This transcript is a product of gene ENSG00000100359.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000248929.9	SGSM3-001	2969	749aa	ENSP00000248929.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14002	B0QY80 B9A6J5 Q96HU1	NM_015705.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000454798.2	SGSM3-201	2359	596aa	ENSP00000390998.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0QY80 B4DMS2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457767.1	SGSM3-004	1086	253aa	ENSP00000399249.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0QY80	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000427834.1	SGSM3-013	793	212aa	ENSP00000407286.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0QY81	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000417424.1	SGSM3-012	666	102aa	ENSP00000415323.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000478085.1	SGSM3-003	4218	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485962.1	SGSM3-002	2973	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000469719.1	SGSM3-010	1029	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000480830.1	SGSM3-005	997	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000481408.1	SGSM3-006	951	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000462457.1	SGSM3-011	881	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470518.1	SGSM3-009	854	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467915.1	SGSM3-008	769	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000481028.1	SGSM3-007	367	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 22, Coding exons: 21, Transcript length: 2,969 bps, Translation length: 749 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96HU1

CCDS

This transcript is a member of the Human CCDS set: CCDS14002

Version

ENST00000248929.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000321504 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000248929.9 SGSM3-001

Summary