Transcript: ENST00000373025.3 PGC-001

Description

progastricsin (pepsinogen C) [Source:HGNC Symbol;Acc:8890]

Gene Synonyms

PEPC, PGII

Location

About this transcript

This transcript has 9 exons, is annotated with 15 domains and features, is associated with 5853 variant alleles and maps to 490 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000373025.3	PGC-001	1371	388aa	ENSP00000362116.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4859	P20142	NM_002630.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000425343.2	PGC-201	1152	315aa	ENSP00000405094.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55000	P20142	NM_001166424.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000356667.4	PGC-003	480	139aa	ENSP00000349094.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q4VXA6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000415707.1	PGC-004	399	86aa	ENSP00000399429.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2A3L9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,371 bps, Translation length: 388 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P20142

CCDS

This transcript is a member of the Human CCDS set: CCDS4859

Version

ENST00000373025.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000040521 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.