Transcript: ENST00000369409.4 PHGDH-001

Description

phosphoglycerate dehydrogenase [Source:HGNC Symbol;Acc:8923]

Gene Synonyms

3-PGDH, 3PGDH, PDG, PGAD, PGD, PGDH, PGDH3, SERA

Location

About this transcript

This transcript has 12 exons, is annotated with 16 domains and features, is associated with 14525 variant alleles and maps to 452 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000369407.3	PHGDH-002	3180	499aa	ENSP00000358415.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SZU1 Q8N5M8 Q96RV5 Q96RV6 Q96RV7 Q96RV8 Q9UMY2 Q9UMY3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000369409.4	PHGDH-001	1913	533aa	ENSP00000358417.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS904	O43175 Q8N5M8 Q96RV5 Q96RV6 Q96RV7 Q96RV8 Q9UMY2 Q9UMY3	NM_006623.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000482968.1	PHGDH-003	1754	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000462324.1	PHGDH-005	1035	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493622.1	PHGDH-006	742	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496756.1	PHGDH-004	603	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000469443.1	PHGDH-007	598	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 1,913 bps, Translation length: 533 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O43175

CCDS

This transcript is a member of the Human CCDS set: CCDS904

Version

ENST00000369409.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000033464 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.