Transcript: ENST00000490940.1 LEPREL1-009

Description

leprecan-like 1 [Source:HGNC Symbol;Acc:19317]

Gene Synonyms

FLJ10718, MCVD, MLAT4, P3H2

Location

Chromosome 3: 189,675,486-189,681,910 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 3073 variant alleles and maps to 184 oligo probes.

Gene

This transcript is a product of gene ENSG00000090530.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000319332.5	LEPREL1-001	3509	708aa	ENSP00000316881.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3294	C9J313 C9JSL4 D3DNV8 Q8IVL5	NM_018192.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000427335.2	LEPREL1-002	2963	527aa	ENSP00000408947.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46981	C9J313 C9JSL4 D3DNV8	NM_001134418.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000426003.1	LEPREL1-003	609	134aa	ENSP00000394326.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JSL4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000444866.1	LEPREL1-004	544	137aa	ENSP00000391374.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J313 C9JSL4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000482780.1	LEPREL1-007	893	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000463171.1	LEPREL1-010	754	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470925.1	LEPREL1-005	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467131.1	LEPREL1-008	554	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000475095.1	LEPREL1-006	552	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000490940.1	LEPREL1-009	472	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 472 bps,

Version

ENST00000490940.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000343863 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000490940.1 LEPREL1-009

Summary