Transcript: ENST00000575287.1 CIC-004

Description

capicua transcriptional repressor [Source:HGNC Symbol;Acc:14214]

Gene Synonyms

KIAA0306

Location

Chromosome 19: 42,797,903-42,799,287 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 4 domains and features, is associated with 1350 variant alleles and maps to 220 oligo probes.

Gene

This transcript is a product of gene ENSG00000079432.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000575354.2	CIC-001	5473	1608aa	ENSP00000458663.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12601	Q96RK0	NM_015125.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000572681.2	CIC-002	8218	2514aa	ENSP00000459719.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L2I4 I3L2J0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000160740.3	CIC-005	6111	1606aa	ENSP00000160740.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000576505.2	CIC-006	1304	320aa	ENSP00000459011.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000573349.1	CIC-007	927	309aa	ENSP00000458543.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L135	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000571942.2	CIC-008	601	144aa	ENSP00000459704.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L2I4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000575287.1	CIC-004	846	144aa	ENSP00000460230.1	Nonsense mediated decay		I3L373	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000575839.2	CIC-009	335	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000571033.1	CIC-003	458	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 846 bps, Translation length: 144 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000575287.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000438536 (version 1)

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Transcript: ENST00000575287.1 CIC-004

Summary