Transcript: ENST00000435706.2 TOP2B-001

Description

topoisomerase (DNA) II beta 180kDa [Source:HGNC Symbol;Acc:11990]

Gene Synonyms

TOPIIB, top2beta

Location

Chromosome 3: 25,639,477-25,705,990 reverse strand.

About this transcript

This transcript has 36 exons, is annotated with 52 domains and features, is associated with 29514 variant alleles and maps to 1113 oligo probes.

Gene

This transcript is a product of gene ENSG00000077097.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000435706.2	TOP2B-001	5389	1621aa	ENSP00000396704.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46776	B4DLV2 E9PCY5 Q02880 Q6LC06 Q8WTY5	NM_001068.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000264331.4	TOP2B-201	5189	1626aa	ENSP00000264331.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DLV2 Q02880 Q6LBI8 Q6LC06 Q8WTY5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000424225.1	TOP2B-002	3525	1150aa	ENSP00000391112.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PCY5 Q6LC06	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000542520.1	TOP2B-203	2061	478aa	ENSP00000446023.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DLV2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540199.1	TOP2B-202	1897	478aa	ENSP00000437352.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DLV2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000413971.1	TOP2B-005	2049	70aa	ENSP00000388216.1	Nonsense mediated decay		H7BZ82	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000475717.1	TOP2B-008	540	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000491510.1	TOP2B-006	584	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470132.1	TOP2B-007	451	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 36, Coding exons: 36, Transcript length: 5,389 bps, Translation length: 1,621 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q02880

CCDS

This transcript is a member of the Human CCDS set: CCDS46776

Version

ENST00000435706.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000340821 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000435706.2 TOP2B-001

Summary