Transcript: ENST00000581516.1 SLC46A1-005

Description

solute carrier family 46 (folate transporter), member 1 [Source:HGNC Symbol;Acc:30521]

Gene Synonyms

G21, HCP1, MGC9564, PCFT

Location

Chromosome 17: 26,732,395-26,734,215 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 3 domains and features, is associated with 843 variant alleles and maps to 75 oligo probes.

Gene

This transcript is a product of gene ENSG00000076351.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000440501.1	SLC46A1-202	6487	459aa	ENSP00000395653.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J3KTE6 J3QRF7 K7EPJ7 Q96NT5	NM_080669.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000321666.5	SLC46A1-201	6400	430aa	ENSP00000318828.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C9JSZ2 J3KTE6 J3QRF7 K7EPJ7	NM_001242366.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000584995.1	SLC46A1-006	1030	250aa	ENSP00000464190.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J3KTE6 J3QRF7 K7EPJ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000581516.1	SLC46A1-005	844	32aa	ENSP00000462942.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J3KTE6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000582735.1	SLC46A1-008	574	124aa	ENSP00000463339.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000584426.1	SLC46A1-011	564	128aa	ENSP00000467416.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7EPJ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000584729.1	SLC46A1-001	6374	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000583295.1	SLC46A1-002	5361	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000578217.1	SLC46A1-007	596	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000582590.1	SLC46A1-004	1435	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000582345.1	SLC46A1-009	530	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 844 bps, Translation length: 32 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000581516.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000446176 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000581516.1 SLC46A1-005

Summary