Transcript: ENST00000262738.3 CELSR1-001

Description

cadherin, EGF LAG seven-pass G-type receptor 1 [Source:HGNC Symbol;Acc:1850]

Gene Synonyms

CDHF9, FMI2, HFMI2, ME2

Location

About this transcript

This transcript has 35 exons, is annotated with 149 domains and features, is associated with 94464 variant alleles and maps to 1074 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262738.3	CELSR1-001	11389	3014aa	ENSP00000262738.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14076	Q8NDT0 Q9NYQ6	NM_014246.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395964.1	CELSR1-201	4194	1397aa	ENSP00000379293.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JDM9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000454637.1	CELSR1-002	2446	772aa	ENSP00000414689.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000497509.1	CELSR1-004	767	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468025.1	CELSR1-005	623	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000473624.1	CELSR1-003	3453	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 35, Coding exons: 35, Transcript length: 11,389 bps, Translation length: 3,014 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NYQ6

CCDS

This transcript is a member of the Human CCDS set: CCDS14076

Version

ENST00000262738.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000318037 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.